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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SiPhyNetwork" in publications use:'
type: software
license: GPL-3.0-only
title: 'SiPhyNetwork: A Phylogenetic Simulator for Reticulate Evolution'
version: 1.1.0
doi: 10.32614/CRAN.package.SiPhyNetwork
abstract: 'A simulator for reticulate evolution under a birth-death-hybridization
  process. Here the birth-death process is extended to consider reticulate Evolution
  by allowing hybridization events to occur. The general purpose simulator allows
  the modeling of three different reticulate patterns: lineage generative hybridization,
  lineage neutral hybridization, and lineage degenerative hybridization. Users can
  also specify hybridization events to be dependent on a trait value or genetic distance.
  We also extend some phylogenetic tree utility and plotting functions for networks.
  We allow two different stopping conditions: simulated to a fixed time or number
  of taxa. When simulating to a fixed number of taxa, the user can simulate under
  the Generalized Sampling Approach that properly simulates phylogenies when assuming
  a uniform prior on the root age.'
authors:
- family-names: Justison
  given-names: Joshua
  email: justisnojo@gmail.com
- name: Claudia Solis-Lemus
- family-names: Heath
  given-names: Tracy A.
repository: https://jjustison.r-universe.dev
commit: 7e2c4153bb3f3530120f7916ddbc771f5f3d39b3
contact:
- family-names: Justison
  given-names: Joshua
  email: justisnojo@gmail.com